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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67239764_67255565_F

Intron Information:

Intron Rank:
144657
Intron Class:
major
Intron Phase:
Intron Coordinates:
67239764 - 67255565
Intron Length:
15802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGAC
5'SS Class:
major
3'SS Sequence:
TTTACTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TCTTTCTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.3
35.7
Major BPS
74
0.6
1
65.6
41.1
Major PPT
84.6
0.78
0.8
82
34.1
Minor 5ss
31.3
-2.1
3.4
43
44.6
Minor BPS
73.8
0.83
1.6
87.49
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027949
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047676
67189241 - 67256146
66906