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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67301010_67301641_F

Intron Information:

Intron Rank:
135218
Intron Class:
major
Intron Phase:
Intron Coordinates:
67301010 - 67301641
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CTTCATTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTGTTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.1
0.65
0.8
76.8
31.5
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
59.6
0.38
1.8
74.52
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022747
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036359
67300250 - 67303141
2892