Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6754403_6756396_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6754403 - 6756396

Intron Length:

1994

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATGG

5'SS Class:

strong_major

3'SS Sequence:

GATTCCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

CGCTTTTTAACA

Flanking Amino Acid:

LLKRQQKLEQLELEQQKIQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

72.5

39.9

Major BPS

87.3

0.93

0.8

36.5

Major PPT

81.2

0.7

0.9

77.5

36.4

Minor 5ss

37.3

-1.4

47.6

47.9

Minor BPS

66.6

0.52

1.3

66.82

40.3

Associated Gene:

Gene:

FAM107B

Ensembl Gene ID:

ENSAPLG00000002518

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002530

6754286 - 6769357

15072

ENSAPLT00000020025

6754286 - 6805262

50977