About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67623268_67635112_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67623268 - 67635112
Intron Length:
11845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGGTTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
VFYDISLRQRLMGHSEWDHK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
72.1
39.9
Major BPS
78.3
0.7
1
80
32.1
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
48.3
-0.1
3.1
64.2
47.3
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
PDE3A
Ensembl Gene ID:
ENSAPLG00000008582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048101
67623175 - 67725902
102728