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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67665710_67685437_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67665710 - 67685437
Intron Length:
19728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGTTGCTGTACT
Flanking Amino Acid:
MWSRREKTSSGTSITVDI
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
89.9
0.9
0.7
89
28.1
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
51
0.11
2.2
77.97
43.8

Associated Gene:

Gene:
PDE3A
Ensembl Gene ID:
ENSAPLG00000008582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008928
67665686 - 67725902
60217