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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67688625_67692932_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67688625 - 67692932
Intron Length:
4308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTACAGAT
5'SS Class:
major
3'SS Sequence:
TCTCATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCATTTTACA
Flanking Amino Acid:
SIKPHESSSSSTDSWNSSLL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.3
67.2
38.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85.3
0.79
0.8
79.4
32.3
Minor 5ss
34
-1.8
3.3
47.9
47.7
Minor BPS
51.2
0.03
1.8
65.66
40.4

Associated Gene:

Gene:
PDE3A
Ensembl Gene ID:
ENSAPLG00000008582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048101
67623175 - 67725902
102728
ENSAPLT00000039747
67606195 - 67725902
119708
ENSAPLT00000019121
67473433 - 67727021
253589
ENSAPLT00000008928
67665686 - 67725902
60217