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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67693049_67696259_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67693049 - 67696259
Intron Length:
3211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
TGTCAATTGACA
Flanking Amino Acid:
HLNAKKQSRQGIPSNISPLT
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
82
0.72
0.9
77
37.2
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
51.4
0.04
1.8
67.66
37.6

Associated Gene:

Gene:
PDE3A
Ensembl Gene ID:
ENSAPLG00000008582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019121
67473433 - 67727021
253589
ENSAPLT00000008928
67665686 - 67725902
60217
ENSAPLT00000048101
67623175 - 67725902
102728
ENSAPLT00000039747
67606195 - 67725902
119708