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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67700977_67702306_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67700977 - 67702306
Intron Length:
1330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTTGT
5'SS Class:
major
3'SS Sequence:
CTTTCTGCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TAAAACTTAACT
Flanking Amino Acid:
IILHPLIPPEDKPVLAPEPL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
69.7
43.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
73.5
0.53
0.8
68.7
31.8
Minor 5ss
46.1
-0.4
3
67.3
43.8
Minor BPS
68.5
0.66
1.5
80.69
39.9

Associated Gene:

Gene:
PDE3A
Ensembl Gene ID:
ENSAPLG00000008582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039747
67606195 - 67725902
119708
ENSAPLT00000019121
67473433 - 67727021
253589
ENSAPLT00000008928
67665686 - 67725902
60217
ENSAPLT00000048101
67623175 - 67725902
102728