About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67710931_67712389_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67710931 - 67712389
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTAAACC
Flanking Amino Acid:
INDHGSASDSDSDSGITHGH
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.2
0.64
0.9
77.2
36.6
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
60.9
0.32
1.6
69.12
36.4

Associated Gene:

Gene:
PDE3A
Ensembl Gene ID:
ENSAPLG00000008582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039747
67606195 - 67725902
119708
ENSAPLT00000019121
67473433 - 67727021
253589
ENSAPLT00000008928
67665686 - 67725902
60217
ENSAPLT00000048101
67623175 - 67725902
102728