About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67717014_67721257_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67717014 - 67721257
Intron Length:
4244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTCACTTAAGA
Flanking Amino Acid:
EGIVNEFYEQGDEEASLGLP
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
92
0.94
0.6
85.2
29.6
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
60.1
0.31
1.8
72.63
38.7

Associated Gene:

Gene:
PDE3A
Ensembl Gene ID:
ENSAPLG00000008582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019121
67473433 - 67727021
253589
ENSAPLT00000008928
67665686 - 67725902
60217
ENSAPLT00000048101
67623175 - 67725902
102728
ENSAPLT00000039747
67606195 - 67725902
119708