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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67721499_67725654_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67721499 - 67725654
Intron Length:
4156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TGGTATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
AGAACATTAACA
Flanking Amino Acid:
EMETYENAESRKKKFKRRKI
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
79.1
0.65
1
72.4
42.2
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
59.2
0.28
1.7
66.33
38.9

Associated Gene:

Gene:
PDE3A
Ensembl Gene ID:
ENSAPLG00000008582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019121
67473433 - 67727021
253589
ENSAPLT00000008928
67665686 - 67725902
60217
ENSAPLT00000048101
67623175 - 67725902
102728
ENSAPLT00000039747
67606195 - 67725902
119708