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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67740285_67742507_R

Intron Information:

Intron Rank:
148578
Intron Class:
major
Intron Phase:
Intron Coordinates:
67740285 - 67742507
Intron Length:
2223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ATTTCCTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
83.8
0.76
0.8
77.4
30.7
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
64.8
0.46
1.9
78.44
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027365
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027398
67739469 - 67742797
3329