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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67746925_67749437_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67746925 - 67749437
Intron Length:
2513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTCTTTCACA
Flanking Amino Acid:
EKQSCCGGIKIFLGALSFVY
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.2
37.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.5
0.84
0.7
83
25.4
Minor 5ss
34
-1.8
3.6
45.7
49.5
Minor BPS
69.1
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
SLCO1C1
Ensembl Gene ID:
ENSAPLG00000007664
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008037
67746641 - 67768912
22272