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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67749580_67750308_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67749580 - 67750308
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTACTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
TGTACTTTCAAA
Flanking Amino Acid:
VGVIDGSFEIGNLLTIILVS
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.2
35.6
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
66.6
0.37
1.1
66.7
38.4
Minor 5ss
41.6
-0.9
3.1
55.7
43.9
Minor BPS
50.5
0.01
1.9
66.12
40

Associated Gene:

Gene:
SLCO1C1
Ensembl Gene ID:
ENSAPLG00000007664
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008037
67746641 - 67768912
22272