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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67753515_67754315_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67753515 - 67754315
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
LYVDIGFVDLDSLTITHKDV
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.8
0.78
0.8
77.4
36.7
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
SLCO1C1
Ensembl Gene ID:
ENSAPLG00000007664
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008037
67746641 - 67768912
22272