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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67754562_67755384_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67754562 - 67755384
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGGTTGTCATTT
Flanking Amino Acid:
QQVKIGEMAKDFLPSLKNLF
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.7
81.1
36.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
24.2
-3
3.7
34.7
41.7
Minor BPS
41.9
-0.5
2.3
59.99
44.1

Associated Gene:

Gene:
SLCO1C1
Ensembl Gene ID:
ENSAPLG00000007664
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008037
67746641 - 67768912
22272