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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67755550_67758940_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67755550 - 67758940
Intron Length:
3391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TGTTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTCTGTTTAATT
Flanking Amino Acid:
QTSSKTNFVIGLINIPAVAF
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
67.9
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
SLCO1C1
Ensembl Gene ID:
ENSAPLG00000007664
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008037
67746641 - 67768912
22272