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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67760955_67765184_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67760955 - 67765184
Intron Length:
4230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTATTTAACACT
Flanking Amino Acid:
GGTPGYMLLLRCIKPHLKSF
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
44
-0.3
2.2
68.66
42.6

Associated Gene:

Gene:
SLCO1C1
Ensembl Gene ID:
ENSAPLG00000007664
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008037
67746641 - 67768912
22272