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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67780369_67787899_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67780369 - 67787899
Intron Length:
7531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAT
U12 Branch Point Sequence:
TCTTGCTCCATC
Flanking Amino Acid:
HGNNFFVGYTGDCILTESEE
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
57.5
0.19
1
52.7
34.2
Major PPT
72.7
0.51
0.9
71
34.6
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
45.9
-0.3
2.3
61.86
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042357
67779384 - 67789870
10487
ENSAPLT00000007923
67779384 - 67803315
23932
ENSAPLT00000007922
67779384 - 67789870
10487