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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67804252_67804676_F

Intron Information:

Intron Rank:
139250
Intron Class:
major
Intron Phase:
Intron Coordinates:
67804252 - 67804676
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCAACTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.4
0.57
0.9
69.7
36.2
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
62.7
0.48
1.5
76.21
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024960
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025688
67803336 - 67804721
1386