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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67819345_67821448_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67819345 - 67821448
Intron Length:
2104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TCCTCTGTAATA
Flanking Amino Acid:
GIPAAKQHLRKLRNIRYAFN
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
88.1
0.86
0.6
87.5
22.8
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
55.1
0.16
2
66.01
41.8

Associated Gene:

Gene:
FAR2
Ensembl Gene ID:
ENSAPLG00000007489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007793
67818011 - 67896696
78686