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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67821577_67825722_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67821577 - 67825722
Intron Length:
4146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATCT
Flanking Amino Acid:
MGQLNTEDRKLYNFDVRQLH
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.2
0.7
0.8
73.1
36.9
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
73.5
0.82
1.5
87.51
38.5

Associated Gene:

Gene:
FAR2
Ensembl Gene ID:
ENSAPLG00000007489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007793
67818011 - 67896696
78686