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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67825853_67829790_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67825853 - 67829790
Intron Length:
3938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TCATCTCTGACT
Flanking Amino Acid:
LYMRLTGRKPRMMKIINRLH
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
79
0.65
0.8
77.5
29.6
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
60.5
0.41
1.7
76.46
40.3

Associated Gene:

Gene:
FAR2
Ensembl Gene ID:
ENSAPLG00000007489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007793
67818011 - 67896696
78686