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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67829963_67836907_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67829963 - 67836907
Intron Length:
6945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATTTTAAAT
Flanking Amino Acid:
GINPFFWGEMEQYVMSTFKR
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
75.6
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.3
0.73
0.8
76
32.6
Minor 5ss
38
-1.4
3.4
47.1
48.3
Minor BPS
64
0.52
1.4
77.29
39.3

Associated Gene:

Gene:
FAR2
Ensembl Gene ID:
ENSAPLG00000007489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007793
67818011 - 67896696
78686