About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67836976_67838831_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67836976 - 67838831
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATTAAAATAATA
Flanking Amino Acid:
LAAGWYTAVHRPKNMLVYNC
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.5
43.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
86.4
0.82
0.7
80
32
Minor 5ss
26
-2.8
3
30.8
42.8
Minor BPS
45.9
-0.3
2
62.36
36.9

Associated Gene:

Gene:
FAR2
Ensembl Gene ID:
ENSAPLG00000007489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007793
67818011 - 67896696
78686