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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67843028_67844371_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67843028 - 67844371
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
ATAGCAATAAAG
Flanking Amino Acid:
VGASWHEPFPGWIDSFNGTS
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.9
39.9
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
47.5
-0.2
2.9
72.4
38
Minor BPS
43.7
-0.6
2
50.67
42.5

Associated Gene:

Gene:
FAR2
Ensembl Gene ID:
ENSAPLG00000007489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007793
67818011 - 67896696
78686