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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67850267_67853474_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67850267 - 67853474
Intron Length:
3208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
CTGATCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCCCCTGATCT
Flanking Amino Acid:
AATVRFDEPLKHALQLNAMG
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.9
32.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.9
0.51
0.9
70.2
36.3
Minor 5ss
52.3
0.08
2.3
68
36.6
Minor BPS
59.4
0.37
1.8
78.57
43.3

Associated Gene:

Gene:
FAR2
Ensembl Gene ID:
ENSAPLG00000007489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007793
67818011 - 67896696
78686