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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68062581_68063078_F

Intron Information:

Intron Rank:
138647
Intron Class:
major
Intron Phase:
Intron Coordinates:
68062581 - 68063078
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTTGCCAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
47
-0.1
2.3
71.93
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047268
68060461 - 68064217
3757
ENSAPLT00000039980
68047821 - 68064217
16397
ENSAPLT00000021212
68015626 - 68064217
48592