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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68091334_68096623_R

Intron Information:

Intron Rank:
130332
Intron Class:
major
Intron Phase:
Intron Coordinates:
68091334 - 68096623
Intron Length:
5290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTATTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.3
0.82
0.7
85.7
28.7
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
61
0.32
1.8
73.54
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017345
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047707
68090559 - 68097588
7030