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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_680913_682815_F

Intron Information:

Intron Rank:
141501
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
680913 - 682815
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGAATGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCCCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.1
32.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
53.4
0.08
1.2
54.2
44.1
Minor 5ss
35.5
-1.6
2.8
42.4
44.3
Minor BPS
60
0.39
1.9
81.02
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026199
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035276
669327 - 687068
17742