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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68264174_68265627_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68264174 - 68265627
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTG
5'SS Class:
strong_major
3'SS Sequence:
CTAACCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCATATTT
Flanking Amino Acid:
AEEEKIKTKKELEYLLEENS
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.1
42.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.9
0.49
0.9
65.8
35.5
Minor 5ss
41.7
-0.9
3.1
56
48.1
Minor BPS
66.8
0.6
1.9
89.01
35.8

Associated Gene:

Gene:
CCDC91
Ensembl Gene ID:
ENSAPLG00000007376
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046050
68214980 - 68276513
61534
ENSAPLT00000007659
68214980 - 68281308
66329