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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68270804_68276434_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68270804 - 68276434
Intron Length:
5631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGATT
5'SS Class:
major
3'SS Sequence:
TTTCTTGCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
PAISWAAFPTVSEVHVSQNI
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
77.1
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.3
0.55
0.9
75
34.7
Minor 5ss
44.4
-0.6
3.2
66.1
45.1
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
CCDC91
Ensembl Gene ID:
ENSAPLG00000007376
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007659
68214980 - 68281308
66329