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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68276514_68277159_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68276514 - 68277159
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAAATAATAACA
Flanking Amino Acid:
MDDDDFGGFEAAESYECGNG
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
77
0.61
0.8
72.1
32.5
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
45.6
-0.3
1.8
55.21
36.2

Associated Gene:

Gene:
CCDC91
Ensembl Gene ID:
ENSAPLG00000007376
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007659
68214980 - 68281308
66329