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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68277203_68281180_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
68277203 - 68281180
Intron Length:
3978

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AACTATATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.7
0.35
1
55.9
43.4
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
CCDC91
Ensembl Gene ID:
ENSAPLG00000007376
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007659
68214980 - 68281308
66329