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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_682843_686341_F

Intron Information:

Intron Rank:
141502
Intron Class:
major
Intron Phase:
Intron Coordinates:
682843 - 686341
Intron Length:
3499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TGTTTCAAACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
71.6
0.54
1
72
33.1
Major PPT
82.8
0.74
0.7
80.8
24.3
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
46.2
-0.2
2.1
64.36
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026199
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035276
669327 - 687068
17742