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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6834266_6866122_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6834266 - 6866122
Intron Length:
31857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCAACCTAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATGCAA
U12 Branch Point Sequence:
GCAACCTAAAAG
Flanking Amino Acid:
PRPSIIHVPKEEEEEEEETQ
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
49.7
-0
1.3
61.4
36.2
Major PPT
50.5
0.01
1.1
49.4
38.1
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
46.5
-0.4
1.9
47.2
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045859
6833242 - 6866575
33334