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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68408304_68408831_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
68408304 - 68408831
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
TCTTTCGGGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
55.9
0.15
1.2
49
38
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
49.4
0.04
2.2
75.01
42.2

Associated Gene:

Gene:
PTHLH
Ensembl Gene ID:
ENSAPLG00000013515
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014069
68408286 - 68418948
10663