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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68408955_68414445_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68408955 - 68414445
Intron Length:
5491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTCTCTTTCTTT
Flanking Amino Acid:
GRSVEGISRRLKRAVSEHQL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.7
34.5
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
85.4
0.8
0.6
84.9
22.8
Minor 5ss
42.2
-0.9
3
62.5
42.2
Minor BPS
43.4
-0.4
3.5
74.81
43.2

Associated Gene:

Gene:
PTHLH
Ensembl Gene ID:
ENSAPLG00000013515
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046569
68408590 - 68418948
10359
ENSAPLT00000045919
68407631 - 68418948
11318
ENSAPLT00000034043
68406289 - 68418948
12660
ENSAPLT00000014069
68408286 - 68418948
10663