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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68414869_68418938_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68414869 - 68418938
Intron Length:
4070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
NSVTTHNHILRRR*
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
37.9
-1.4
3
50.4
45.8
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
PTHLH
Ensembl Gene ID:
ENSAPLG00000013515
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034043
68406289 - 68418948
12660
ENSAPLT00000014069
68408286 - 68418948
10663
ENSAPLT00000046569
68408590 - 68418948
10359
ENSAPLT00000045919
68407631 - 68418948
11318