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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68508822_68513597_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68508822 - 68513597
Intron Length:
4776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGCTAATAAATT
Flanking Amino Acid:
CSRNCCLQRNVSCNLAVFYH
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81.5
0.71
0.9
76.5
37.7
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
47
-0.1
2.1
66.74
43.9

Associated Gene:

Gene:
MANSC4
Ensembl Gene ID:
ENSAPLG00000013467
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014017
68507809 - 68515080
7272