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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68513733_68514391_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68513733 - 68514391
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
TATGATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATGATTTAACA
Flanking Amino Acid:
INVVLYNITTGIDPDLLIFE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
80
0.75
1
78.6
31
Major PPT
71.7
0.49
1
66.2
43.6
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
64.5
0.45
1.6
73.39
38.3

Associated Gene:

Gene:
MANSC4
Ensembl Gene ID:
ENSAPLG00000013467
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014017
68507809 - 68515080
7272