About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68523317_68536331_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68523317 - 68536331
Intron Length:
13015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TAGTCTTTAAAA
Flanking Amino Acid:
LLTVLYHESWKTEMWESEKT
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.7
44.5
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
40.7
-1
2.9
49.5
46.5
Minor BPS
70.8
0.65
1.3
73.8
37.7

Associated Gene:

Gene:
MRPS35
Ensembl Gene ID:
ENSAPLG00000013383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013952
68523050 - 68546655
23606