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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68536402_68537873_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68536402 - 68537873
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTGTTTATATTT
Flanking Amino Acid:
DTDILTITTDRCPLRRQNYD
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.1
39.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
46.4
-0.4
3.1
63.6
48.1
Minor BPS
49.5
0.05
1.8
71.68
40.3

Associated Gene:

Gene:
MRPS35
Ensembl Gene ID:
ENSAPLG00000013383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013952
68523050 - 68546655
23606