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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68537984_68540475_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68537984 - 68540475
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
CTTGTATTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTCTTGTATT
Flanking Amino Acid:
NPKARVVTLRVKLSNLNLDD
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
66.3
0.37
1.1
64
41
Minor 5ss
38.7
-1.3
2.8
48
41.7
Minor BPS
55.8
0.26
1.8
76.15
40.9

Associated Gene:

Gene:
MRPS35
Ensembl Gene ID:
ENSAPLG00000013383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013952
68523050 - 68546655
23606