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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68540616_68542940_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68540616 - 68542940
Intron Length:
2325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
AIKKHCAALKDFCTEWPSAL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
MRPS35
Ensembl Gene ID:
ENSAPLG00000013383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013952
68523050 - 68546655
23606