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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68543681_68544562_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68543681 - 68544562
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAA
U12 Branch Point Sequence:
ACTTCCATAATT
Flanking Amino Acid:
RGRTSQFVRSHAPPRTERMA
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
66.7
0.42
1.1
69.7
35.6
Major PPT
79.6
0.67
0.9
81.2
36.5
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
70.4
0.72
1.6
83.35
37.8

Associated Gene:

Gene:
MRPS35
Ensembl Gene ID:
ENSAPLG00000013383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013952
68523050 - 68546655
23606