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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68583297_68618812_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68583297 - 68618812
Intron Length:
35516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTCTTTTAATA
Flanking Amino Acid:
EFATGTLFWMELITTLYIGF
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.2
0.66
0.8
76.9
30.3
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
68.4
0.57
1.2
71.66
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013856
68555383 - 68864288
308906