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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68627473_68628335_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68627473 - 68628335
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGACCC
5'SS Class:
major
3'SS Sequence:
GATTTTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATAG
Flanking Amino Acid:
QIPAAASLIQTLWRCYAAEK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.3
63.4
41.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
0.9
70.2
39.8
Minor 5ss
28.6
-2.4
2.8
35.2
40.7
Minor BPS
48.2
-0.2
2
60.04
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013856
68555383 - 68864288
308906