About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68628465_68630402_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68628465 - 68630402
Intron Length:
1938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATAG
5'SS Class:
major
3'SS Sequence:
TCTACTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGTTTTGATA
Flanking Amino Acid:
APSSPSLRKQARRSKRKVKP
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
68.6
39.1
Major BPS
100
1.24
0.5
100
0
Major PPT
77.9
0.63
0.8
72.1
32.4
Minor 5ss
42.8
-0.8
2.9
55.7
48.5
Minor BPS
57.7
0.24
1.3
65.52
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013856
68555383 - 68864288
308906