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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6882311_6883416_R

Intron Information:

Intron Rank:
141555
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6882311 - 6883416
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTCTCAGC
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTCTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
ATCTCTCGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
52.2
44.8
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
85.1
0.79
0.7
80.7
24.5
Minor 5ss
35.1
-1.7
2.9
44.9
42.5
Minor BPS
43.4
-0.4
2.1
63.42
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023475
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024331
6882009 - 6886180
4172